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AIDS RESEARCH AND HUMAN RETROVIRUSES
Volume 25, Number 11, 2009
© Mary Ann Liebert, Inc.
DOI: 10.1089=aid.2008.0019

 

Association of CCR5-59029 A=G and CCL3L1 Copy Number Polymorphism with HIV Type 1 Transmission=Progression among HIV Type 1-Seropositive and Repeatedly Sexually Exposed HIV Type 1-Seronegative North Indians

 

Anurag Rathore,1 Animesh Chatterjee,1 P. Sivarama,2 Naohiko Yamamoto,3
Pradeep K. Singhal,4 and Tapan N. Dhole1

 

Abstract

 

The CCR5D32 mutation does not account for HIV-1 resistance in the majority of persons who are repeatedly exposed to HIV-1 by high-risk activities but remain seronegative and uninfected. Therefore, we investigated the impact of CCR5 59029 A=G and CCL3L1 copy number polymorphism on HIV-1 disease susceptibility and progression among HIV-1-infected and HIV-1-exposed seronegative North Indians. HIV-1-seropositive (HSP, n=196) patients, stratified on the basis of disease severity (Stages I, II, and III) and HIV-1-exposed seronegative (HES, n=47) individuals were genotyped for CCR5-59029A=G polymorphism by PCR-RFLP and CCL3L1 copy number by the real-time TaqMan PCR method. A group of ethnically matched HIV-1-seronegative (HSN, n=315) healthy volunteers were also genotyped as controls. Statistical analysis was done by SPSS software. The CCR5-59029 AG genotype was significantly higher in the HES compared with the HSP group (57.44% vs. 37.24%, p=0.014). The CCL3L1 mean copy number of HES was higher compared with the HSP groups (3.1480.291 vs. 2.7950.122, p=0.212), but was not significant when compared with independent samplest test. Possession of CCL3L1 copies <2 or >2 was not associated with enhanced or reduced risk of HIV-1 acquisition. Gene-gene interaction studies showed enrichment of the CCR5-59029AG*CCL3L1>2 genotype in he HES group when compared with the HSP group (31.91% vs. 15.81%, p=0.021, OR=0.401, CI=0.194-0.826). The increased frequency of the CCR5-59029AG*CCL3L1>2 genotype among HES individuals led us to conclude that the CCR5-59029 AG genotype and CCL3L1 gene dose appeared to have synergistic or interactive effects and are expected to be involved in the host innate resistance to HIV-1 infection.

 

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An insufficient anti-inflammatory cytokine response in mouse brain

RT Kit, Genome Diagnostics, New Delhi, India) as per. the manufacturer's protocol. ..... role and molecular mechanisms controlling JEV in- ...

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Microbes and Infection : Kinetics of cytokine profile during ...

Infection with Japanese encephalitis virus (JEV) is mostly .... X-RT- Professional RT Kit (Genome Diagnostics, New Delhi) as per the manufacturer's protocol. ...

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by V Saxena - 2008

 

Japanese encephalitis virus produces a CD4+ Th2 response and ...

Viral RNA from supernatants of tissue homogenates was isolated by using a QIAamp viral RNA kit (Qiagen) and virus titres were quantified by using a Geno Sen ...

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Japanese encephalitis virus produces a CD4 Th2 response and ...

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Here are some publications based on our assays with our help and support through our associate company Professional Biotech Pvt. Ltd.

1. Sudha Sazawal1, Syed Khizer Hasan1, Pankhi Dutta1, Bijender Kumar1, Rajat Kumar1, Lalit Kumar2, V. P. Choudhry1 and Renu Saxena1

Department of Haematology, All India Institute of Medical Sciences, New Delhi, 110 029, India
Department of Medical Oncology, All India Institute of Medical Sciences, New Delhi, 110 029, India

 

Received: 15 May 2005 Accepted: 20 July 2005 Published online: 12 November 2005

 

Abstract Thirty six patients with acute promyelocytic leukemia were studied by reverse transcriptase-polymerase chain reaction (RT-PCR) and real-time PCR. There was concordance between the results achieved by both the methods except in one case, which was negative by RT-PCR but positive by real-time PCR. The prevalence of bcr3 (short isoform) was found to be significantly higher than that of bcr1 (long isoform) (64 vs. 36%, P=0.03). No correlation was found between age, sex, and white blood cell (WBC) count at diagnosis. Molecular remission was achieved in 66.6% of patients with bcr3 isoform. Median WBC count at presentation was found to be higher than that in the West.

Keywords Acute promyelocytic leukemia - PML/RARa isoform - Hematological remission - Molecular remission - Reverse transcription - polymerase chain reaction (RT-PCR) - Real-time PCR

 

Over-representation of bcr3 subtype of PML/RAR a fusion gene in ...

 

Sudha Sazawal . Syed Khizer Hasan . Pankhi Dutta . Bijender Kumar ..... Acknowledgements We are grateful to Professional Biotech Pvt. ...

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2. Acta Tropica : Development of a real-time PCR assay for the ...

Diprabhanu Bakshia, 1, Pradeep Singhal b, Sanjay K. Mahajanc, ..... The authors are thankful to Mr. Nitin Semwal, Professional Biotech, New Delhi, ...

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3. World J Gastroenterol

Zahid Hussain, Bhudev C Das, Syed A Husain, Sunil K Polipalli, Tanzeel Ahmed, ..... and Mr. Pradeep K Singhal, Professional Biotech Ltd. New Delhi, ...

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World J Gastroenterol

 

Zahid Hussain, Bhudev C Das, Syed A Husain, Sunil K Polipalli, Tanzeel Ahmed, ..... Pradeep K Singhal, Professional Biotech Ltd. New Delhi, India for their ...

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Hepatitis B Virus Infection: Emerging Challenges for the Armed Forces

 

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